HL_9B24_041

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9B24|1|Y|A|195, 9B24|1|Y|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_041 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.1556

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9B24|1|Y|G|193
9B24|1|Y|A|194
9B24|1|Y|A|195
9B24|1|Y|A|196
9B24|1|Y|C|197
9B24|1|Y|A|198
9B24|1|Y|U|199
9B24|1|Y|C|200

Current chains

Chain Y

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein uL15

Chain t

Large ribosomal subunit protein bL28