HL_9B24_042

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAAAAUG

Length

7 nucleotides

Bulged bases

9B24|1|Y|U|229

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_042 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.3254

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

9B24|1|Y|C|224
9B24|1|Y|A|225
9B24|1|Y|A|226
9B24|1|Y|A|227
9B24|1|Y|A|228
9B24|1|Y|U|229
9B24|1|Y|G|230

Current chains

Chain Y

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein uL15