HL_9B24_045

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

9B24|1|Y|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_045 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.2753

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9B24|1|Y|U|387
9B24|1|Y|U|388
9B24|1|Y|G|389
9B24|1|Y|G|390
9B24|1|Y|G|391
9B24|1|Y|A|392
9B24|1|Y|U|393
9B24|1|Y|G|394

Current chains

Chain Y

23S rRNA

Nearby chains

Chain q

Large ribosomal subunit protein uL24