HL_9B24_058
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GGUUGAAGAC
- Length
- 10 nucleotides
- Bulged bases
- 9B24|1|Y|U|862, 9B24|1|Y|G|866, 9B24|1|Y|A|867
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B24_058 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1696
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
9B24|1|Y|G|859
9B24|1|Y|G|860
9B24|1|Y|U|861
9B24|1|Y|U|862
9B24|1|Y|G|863
9B24|1|Y|A|864
9B24|1|Y|A|865
9B24|1|Y|G|866
9B24|1|Y|A|867
9B24|1|Y|C|868
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain a
- Large ribosomal subunit protein uL3
- Chain o
- Large ribosomal subunit protein uL22
- Chain x
- Large ribosomal subunit protein bL32
- Chain z
- Large ribosomal subunit protein bL34
Coloring options: