HL_9B24_080

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGCAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_080 not in the Motif Atlas

Homologous match to HL_9DFE_042

Geometric discrepancy: 0.1832

The information below is about HL_9DFE_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9B24|1|Y|G|1969
9B24|1|Y|G|1970
9B24|1|Y|C|1971
9B24|1|Y|A|1972
9B24|1|Y|C|1973

Current chains

Chain Y

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein bL19