HL_9B24_087

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUAUAUCC

Length

8 nucleotides

Bulged bases

9B24|1|Y|A|2434, 9B24|1|Y|U|2435, 9B24|1|Y|U|2437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_087 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.2294

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9B24|1|Y|G|2432
9B24|1|Y|U|2433
9B24|1|Y|A|2434
9B24|1|Y|U|2435
9B24|1|Y|A|2436
9B24|1|Y|U|2437
9B24|1|Y|C|2438
9B24|1|Y|C|2439

Current chains

Chain Y

23S rRNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL2