HL_9B24_092

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGGACAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_092 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.3294

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9B24|1|Y|C|2579
9B24|1|Y|G|2580
9B24|1|Y|G|2581
9B24|1|Y|A|2582
9B24|1|Y|C|2583
9B24|1|Y|A|2584
9B24|1|Y|U|2585
9B24|1|Y|G|2586

Current chains

Chain Y

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL35

Chain h

Large ribosomal subunit protein uL15

Chain s

Large ribosomal subunit protein bL27