HL_9B50_001

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_001 not in the Motif Atlas

Geometric match to HL_8CRE_191

Geometric discrepancy: 0.1464

The information below is about HL_8CRE_191

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31940.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9B50|1|AA|U|12
9B50|1|AA|U|13
9B50|1|AA|U|14
9B50|1|AA|G|15
9B50|1|AA|A|16
9B50|1|AA|U|17
9B50|1|AA|C|18
9B50|1|AA|A|19
9B50|1|AA|U|20
9B50|1|AA|G|21
9B50|1|AA|G|22

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AE

30S ribosomal protein S5

Chain AL

30S ribosomal protein S12