HL_9B50_006

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9B50|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_006 not in the Motif Atlas

Geometric match to HL_8B0X_005

Geometric discrepancy: 0.0474

The information below is about HL_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9B50|1|AA|G|259
9B50|1|AA|G|260
9B50|1|AA|U|261
9B50|1|AA|A|262
9B50|1|AA|A|263
9B50|1|AA|C|264
9B50|1|AA|G|265
9B50|1|AA|G|266
9B50|1|AA|C|267

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20