HL_9B50_027

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9B50|1|AA|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_027 not in the Motif Atlas

Geometric match to HL_4W90_003

Geometric discrepancy: 0.2224

The information below is about HL_4W90_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9B50|1|AA|U|1165
9B50|1|AA|G|1166
9B50|1|AA|A|1167
9B50|1|AA|U|1168
9B50|1|AA|A|1169
9B50|1|AA|A|1170
9B50|1|AA|A|1171

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2