3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
9B50|1|AA|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B50_030 not in the Motif Atlas
Geometric match to HL_8B0X_027
Geometric discrepancy: 0.1011
The information below is about HL_8B0X_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_86432.1
Basepair signature
cWW-tWH-tWH-F-F-F
Number of instances in this motif group
5

Unit IDs

9B50|1|AA|G|1356
9B50|1|AA|A|1357
9B50|1|AA|U|1358
9B50|1|AA|C|1359
9B50|1|AA|A|1360
9B50|1|AA|G|1361
9B50|1|AA|A|1362
9B50|1|AA|A|1363
9B50|1|AA|U|1364
9B50|1|AA|G|1365
9B50|1|AA|C|1366

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AC
30S ribosomal protein S3
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AN
30S ribosomal protein S14

Coloring options:


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