3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
9B50|1|BA|A|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B50_035 not in the Motif Atlas
Geometric match to HL_8B0X_035
Geometric discrepancy: 0.0551
The information below is about HL_8B0X_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82710.3
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

9B50|1|BA|G|123
9B50|1|BA|G|124
9B50|1|BA|A|125
9B50|1|BA|A|126
9B50|1|BA|A|127
9B50|1|BA|C|128

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B2
50S ribosomal protein L34
Chain BT
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0705 s