HL_9B50_057

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

9B50|1|BA|U|958, 9B50|1|BA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_057 not in the Motif Atlas

Geometric match to HL_4WF9_027

Geometric discrepancy: 0.1017

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B50|1|BA|U|955
9B50|1|BA|G|956
9B50|1|BA|C|957
9B50|1|BA|U|958
9B50|1|BA|A|959
9B50|1|BA|A|960
9B50|1|BA|C|961
9B50|1|BA|G|962

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16