HL_9B50_067

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9B50|1|BA|A|1453, 9B50|1|BA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_067 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.1755

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9B50|1|BA|C|1451
9B50|1|BA|G|1452
9B50|1|BA|A|1453
9B50|1|BA|C|1454
9B50|1|BA|G|1455
9B50|1|BA|G|1456
9B50|1|BA|U|1457
9B50|1|BA|U|1458
9B50|1|BA|G|1459

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L17