3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GCAAAUC
Length
7 nucleotides
Bulged bases
9B50|1|BA|C|1493, 9B50|1|BA|U|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B50_068 not in the Motif Atlas
Geometric match to HL_8B0X_065
Geometric discrepancy: 0.1115
The information below is about HL_8B0X_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_49081.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
17

Unit IDs

9B50|1|BA|G|1492
9B50|1|BA|C|1493
9B50|1|BA|A|1494
9B50|1|BA|A|1495
9B50|1|BA|A|1496
9B50|1|BA|U|1497
9B50|1|BA|C|1498

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BC
50S ribosomal protein L2

Coloring options:


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