HL_9B50_076

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9B50|1|BA|A|1780, 9B50|1|BA|U|1781, 9B50|1|BA|U|1782, 9B50|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_076 not in the Motif Atlas

Geometric match to HL_8B0X_073

Geometric discrepancy: 0.0702

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9B50|1|BA|U|1777
9B50|1|BA|U|1778
9B50|1|BA|U|1779
9B50|1|BA|A|1780
9B50|1|BA|U|1781
9B50|1|BA|U|1782
9B50|1|BA|A|1783
9B50|1|BA|A|1784
9B50|1|BA|A|1785
9B50|1|BA|A|1786
9B50|1|BA|A|1787

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2