HL_9B50_097

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9B50|1|BA|G|2751, 9B50|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_097 not in the Motif Atlas

Geometric match to HL_8B0X_093

Geometric discrepancy: 0.0414

The information below is about HL_8B0X_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

9B50|1|BA|C|2745
9B50|1|BA|U|2746
9B50|1|BA|G|2747
9B50|1|BA|A|2748
9B50|1|BA|A|2749
9B50|1|BA|A|2750
9B50|1|BA|G|2751
9B50|1|BA|C|2752
9B50|1|BA|A|2753
9B50|1|BA|U|2754
9B50|1|BA|C|2755
9B50|1|BA|U|2756
9B50|1|BA|A|2757
9B50|1|BA|A|2758
9B50|1|BA|G|2759

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13