HL_9BDL_005

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9BDL|1|A18S|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_005 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2119

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9BDL|1|A18S|G|288
9BDL|1|A18S|G|289
9BDL|1|A18S|U|290
9BDL|1|A18S|G|291
9BDL|1|A18S|A|292
9BDL|1|A18S|C|293
9BDL|1|A18S|U|294
9BDL|1|A18S|C|295

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS11

40S ribosomal protein S11