HL_9BDL_016

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9BDL|1|A18S|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_016 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.1113

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9BDL|1|A18S|U|820
9BDL|1|A18S|G|821
9BDL|1|A18S|U|822
9BDL|1|A18S|U|823
9BDL|1|A18S|C|824
9BDL|1|A18S|A|825
9BDL|1|A18S|A|826
9BDL|1|A18S|A|827
9BDL|1|A18S|G|828

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS09

40S ribosomal protein S9

Chain AS24

40S ribosomal protein S24