HL_9BDL_057

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

9BDL|1|A28S|U|1596, 9BDL|1|A28S|A|1600, 9BDL|1|A28S|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_057 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0676

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

9BDL|1|A28S|A|1593
9BDL|1|A28S|C|1594
9BDL|1|A28S|G|1595
9BDL|1|A28S|U|1596
9BDL|1|A28S|G|1597
9BDL|1|A28S|C|1598
9BDL|1|A28S|G|1599
9BDL|1|A28S|A|1600
9BDL|1|A28S|A|1601
9BDL|1|A28S|U|1602

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL17

60S ribosomal protein L17

Chain AL37

60S ribosomal protein L37