HL_9BDL_061

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

9BDL|1|A28S|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_061 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3896

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9BDL|1|A28S|C|1816
9BDL|1|A28S|U|1817
9BDL|1|A28S|G|1818
9BDL|1|A28S|G|1819
9BDL|1|A28S|U|1820
9BDL|1|A28S|G|1821
9BDL|1|A28S|U|1822
9BDL|1|A28S|G|1823

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL05

Large ribosomal subunit protein uL18

Chain AL21

60S ribosomal protein L21

Chain AL29

Large ribosomal subunit protein eL29