HL_9BDL_088

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9BDL|1|A28S|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_088 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0789

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9BDL|1|A28S|U|3796
9BDL|1|A28S|C|3797
9BDL|1|A28S|U|3798
9BDL|1|A28S|A|3799
9BDL|1|A28S|A|3800
9BDL|1|A28S|U|3801
9BDL|1|A28S|U|3802
9BDL|1|A28S|A|3803
9BDL|1|A28S|G|3804

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL23

60S ribosomal protein L23