HL_9BDN_013

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_013 not in the Motif Atlas

Homologous match to HL_8C3A_205

Geometric discrepancy: 0.1377

The information below is about HL_8C3A_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.2

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BDN|1|A18S|A|569
9BDN|1|A18S|C|570
9BDN|1|A18S|U|571
9BDN|1|A18S|U|572
9BDN|1|A18S|U|573
9BDN|1|A18S|A|574
9BDN|1|A18S|A|575
9BDN|1|A18S|A|576
9BDN|1|A18S|U|577
9BDN|1|A18S|C|578
9BDN|1|A18S|C|579
9BDN|1|A18S|U|580
9BDN|1|A18S|U|581

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS24

40S ribosomal protein S24