HL_9BDN_025

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9BDN|1|A18S|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_025 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1143

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BDN|1|A18S|G|1245
9BDN|1|A18S|A|1246
9BDN|1|A18S|C|1247
9BDN|1|A18S|U|1248
9BDN|1|A18S|C|1249
9BDN|1|A18S|A|1250
9BDN|1|A18S|A|1251
9BDN|1|A18S|C|1252
9BDN|1|A18S|A|1253
9BDN|1|A18S|C|1254

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain ANG

Angiogenin

Chain AS16

Small ribosomal subunit protein uS9

Chain AS20

40S ribosomal protein S20

Chain AS29

40S ribosomal protein S29

Chain PTRN

Transfer RNA; tRNA