HL_9BDN_026

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9BDN|1|A18S|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_026 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3996

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9BDN|1|A18S|A|1295
9BDN|1|A18S|U|1296
9BDN|1|A18S|U|1297
9BDN|1|A18S|G|1298
9BDN|1|A18S|A|1299
9BDN|1|A18S|U|1300
9BDN|1|A18S|A|1301
9BDN|1|A18S|G|1302
9BDN|1|A18S|C|1303
9BDN|1|A18S|U|1304

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS15

40S ribosomal protein S15

Chain AS29

40S ribosomal protein S29