HL_9BDN_058

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9BDN|1|A28S|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_058 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1173

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BDN|1|A28S|G|1627
9BDN|1|A28S|C|1628
9BDN|1|A28S|G|1629
9BDN|1|A28S|A|1630
9BDN|1|A28S|A|1631
9BDN|1|A28S|A|1632
9BDN|1|A28S|G|1633
9BDN|1|A28S|A|1634
9BDN|1|A28S|C|1635

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL15

60S ribosomal protein L15

Chain AL37

60S ribosomal protein L37