HL_9BDN_061

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_061 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.347

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9BDN|1|A28S|C|1816
9BDN|1|A28S|U|1817
9BDN|1|A28S|G|1818
9BDN|1|A28S|G|1819
9BDN|1|A28S|U|1820
9BDN|1|A28S|G|1821
9BDN|1|A28S|U|1822
9BDN|1|A28S|G|1823

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL05

60S ribosomal protein L5

Chain AL21

60S ribosomal protein L21

Chain AL29

Large ribosomal subunit protein eL29