HL_9BDN_067

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACGAGAACUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_067 not in the Motif Atlas

Geometric match to HL_5E81_236

Geometric discrepancy: 0.3388

The information below is about HL_5E81_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BDN|1|A28S|A|2375
9BDN|1|A28S|A|2376
9BDN|1|A28S|C|2377
9BDN|1|A28S|G|2378
9BDN|1|A28S|A|2379
9BDN|1|A28S|G|2380
9BDN|1|A28S|A|2381
9BDN|1|A28S|A|2382
9BDN|1|A28S|C|2383
9BDN|1|A28S|U|2384
9BDN|1|A28S|U|2385

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17

Chain AL19

60S ribosomal protein L19

Chain AL31

60S ribosomal protein L31