HL_9BDN_078

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|C|2794, 9BDN|1|A28S|G|2796, 9BDN|1|A28S|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_078 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1022

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9BDN|1|A28S|C|2792
9BDN|1|A28S|G|2793
9BDN|1|A28S|C|2794
9BDN|1|A28S|A|2795
9BDN|1|A28S|G|2796
9BDN|1|A28S|C|2797
9BDN|1|A28S|A|2798
9BDN|1|A28S|G|2799

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL17

60S ribosomal protein L17

Chain AL37

60S ribosomal protein L37

Chain AL39

60S ribosomal protein L39