HL_9BDN_083

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

9BDN|1|A28S|A|3642, 9BDN|1|A28S|A|3643, 9BDN|1|A28S|U|3644, 9BDN|1|A28S|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_083 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1375

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9BDN|1|A28S|U|3639
9BDN|1|A28S|U|3640
9BDN|1|A28S|U|3641
9BDN|1|A28S|A|3642
9BDN|1|A28S|A|3643
9BDN|1|A28S|U|3644
9BDN|1|A28S|U|3645
9BDN|1|A28S|A|3646
9BDN|1|A28S|A|3647
9BDN|1|A28S|A|3648
9BDN|1|A28S|A|3649

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL37

60S ribosomal protein L37