HL_9BDP_002

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

9BDP|1|A18S|G|75, 9BDP|1|A18S|U|76

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_002 not in the Motif Atlas

Geometric match to HL_1OOA_001

Geometric discrepancy: 0.3886

The information below is about HL_1OOA_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9BDP|1|A18S|C|69
9BDP|1|A18S|G|70
9BDP|1|A18S|G|71
9BDP|1|A18S|C|72
9BDP|1|A18S|C|73
9BDP|1|A18S|G|74
9BDP|1|A18S|G|75
9BDP|1|A18S|U|76
9BDP|1|A18S|A|77
9BDP|1|A18S|C|78
9BDP|1|A18S|A|79
9BDP|1|A18S|G|80

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6