HL_9BDP_009

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9BDP|1|A18S|C|450, 9BDP|1|A18S|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_009 not in the Motif Atlas

Homologous match to HL_8C3A_201

Geometric discrepancy: 0.1009

The information below is about HL_8C3A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BDP|1|A18S|C|441
9BDP|1|A18S|C|442
9BDP|1|A18S|U|443
9BDP|1|A18S|G|444
9BDP|1|A18S|A|445
9BDP|1|A18S|G|446
9BDP|1|A18S|A|447
9BDP|1|A18S|A|448
9BDP|1|A18S|A|449
9BDP|1|A18S|C|450
9BDP|1|A18S|G|451
9BDP|1|A18S|G|452

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8

Chain AS24

40S ribosomal protein S24