HL_9BDP_025

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9BDP|1|A18S|U|1300, 9BDP|1|A18S|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_025 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.382

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9BDP|1|A18S|A|1295
9BDP|1|A18S|U|1296
9BDP|1|A18S|U|1297
9BDP|1|A18S|G|1298
9BDP|1|A18S|A|1299
9BDP|1|A18S|U|1300
9BDP|1|A18S|A|1301
9BDP|1|A18S|G|1302
9BDP|1|A18S|C|1303
9BDP|1|A18S|U|1304

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS15

40S ribosomal protein S15

Chain AS29

40S ribosomal protein S29