HL_9BDP_063

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_063 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2912

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9BDP|1|A28S|U|2006
9BDP|1|A28S|G|2007
9BDP|1|A28S|U|2008
9BDP|1|A28S|A|2009
9BDP|1|A28S|A|2010
9BDP|1|A28S|C|2011
9BDP|1|A28S|A|2012
9BDP|1|A28S|A|2013

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL12

uL11

Chain AL40

Large ribosomal subunit protein eL40

Chain TIRN

Transfer RNA; tRNA