HL_9BH5_007
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUGCGAGCC
- Length
- 9 nucleotides
- Bulged bases
- 9BH5|1|A5|G|226
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_007 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.0919
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
9BH5|1|A5|G|224
9BH5|1|A5|U|225
9BH5|1|A5|G|226
9BH5|1|A5|C|227
9BH5|1|A5|G|228
9BH5|1|A5|A|229
9BH5|1|A5|G|230
9BH5|1|A5|C|231
9BH5|1|A5|C|232
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CY
- Large ribosomal subunit protein uL24
- Chain Ce
- Large ribosomal subunit protein eL32
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