HL_9BH5_008
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUUGAAAGUG
- Length
- 10 nucleotides
- Bulged bases
- 9BH5|1|A5|A|289, 9BH5|1|A5|A|290
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_008 not in the Motif Atlas
- Homologous match to HL_8P9A_120
- Geometric discrepancy: 0.2479
- The information below is about HL_8P9A_120
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_63894.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
9BH5|1|A5|C|284
9BH5|1|A5|U|285
9BH5|1|A5|U|286
9BH5|1|A5|G|287
9BH5|1|A5|A|288
9BH5|1|A5|A|289
9BH5|1|A5|A|290
9BH5|1|A5|G|291
9BH5|1|A5|U|292
9BH5|1|A5|G|293
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CL
- Large ribosomal subunit protein eL13
- Chain CN
- Large ribosomal subunit protein eL15
- Chain CQ
- Large ribosomal subunit protein eL18
- Chain Ca
- Large ribosomal subunit protein uL15
- Chain Co
- Large ribosomal subunit protein eL42
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