HL_9BH5_013

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9BH5|1|A5|C|677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_013 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0615

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9BH5|1|A5|U|669
9BH5|1|A5|C|670
9BH5|1|A5|U|671
9BH5|1|A5|U|672
9BH5|1|A5|G|673
9BH5|1|A5|A|674
9BH5|1|A5|A|675
9BH5|1|A5|A|676
9BH5|1|A5|C|677
9BH5|1|A5|A|678

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain Ca

Large ribosomal subunit protein uL15

Chain Ce

Large ribosomal subunit protein eL32