HL_9BH5_021

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9BH5|1|A5|C|1014, 9BH5|1|A5|A|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_021 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1318

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9BH5|1|A5|C|1013
9BH5|1|A5|C|1014
9BH5|1|A5|U|1015
9BH5|1|A5|C|1016
9BH5|1|A5|A|1017
9BH5|1|A5|G|1018

Current chains

Chain A5

28S rRNA

Nearby chains

Chain Ca

Large ribosomal subunit protein uL15

Chain Cb

60S ribosomal protein L29

Chain Co

Large ribosomal subunit protein eL42