HL_9BH5_025
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_025 not in the Motif Atlas
- Homologous match to HL_8C3A_026
- Geometric discrepancy: 0.1205
- The information below is about HL_8C3A_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9BH5|1|A5|G|1200
9BH5|1|A5|G|1201
9BH5|1|A5|A|1202
9BH5|1|A5|U|1203
9BH5|1|A5|G|1204
9BH5|1|A5|A|1205
9BH5|1|A5|A|1206
9BH5|1|A5|C|1207
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain CF
- Large ribosomal subunit protein uL30
- Chain Ce
- Large ribosomal subunit protein eL32
- Chain Cf
- Large ribosomal subunit protein eL33
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