HL_9BH5_030

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGUAGUU

Length

7 nucleotides

Bulged bases

9BH5|1|A5|G|1572, 9BH5|1|A5|U|1576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_030 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.0994

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9BH5|1|A5|A|1571
9BH5|1|A5|G|1572
9BH5|1|A5|U|1573
9BH5|1|A5|A|1574
9BH5|1|A5|G|1575
9BH5|1|A5|U|1576
9BH5|1|A5|U|1577

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CP

Large ribosomal subunit protein uL22

Chain CR

Large ribosomal subunit protein eL19