HL_9BH5_035

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGUUUUCUUCU

Length

11 nucleotides

Bulged bases

9BH5|1|A5|U|1780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_035 not in the Motif Atlas

Geometric match to HL_5WWT_001

Geometric discrepancy: 0.3331

The information below is about HL_5WWT_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

9BH5|1|A5|A|1772
9BH5|1|A5|G|1773
9BH5|1|A5|U|1774
9BH5|1|A5|U|1775
9BH5|1|A5|U|1776
9BH5|1|A5|U|1777
9BH5|1|A5|C|1778
9BH5|1|A5|U|1779
9BH5|1|A5|U|1780
9BH5|1|A5|C|1781
9BH5|1|A5|U|1782

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CR

Large ribosomal subunit protein eL19

Chain CU

Large ribosomal subunit protein eL22