HL_9BH5_040

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9BH5|1|A5|U|2018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_040 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0706

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9BH5|1|A5|C|2016
9BH5|1|A5|U|2017
9BH5|1|A5|U|2018
9BH5|1|A5|C|2019
9BH5|1|A5|G|2020
9BH5|1|A5|G|2021

Current chains

Chain A5

28S rRNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

eL41

Chain Cp

Large ribosomal subunit protein eL43