HL_9BH5_047

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUAAUUG

Length

7 nucleotides

Bulged bases

9BH5|1|A5|U|2401

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_047 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.2635

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9BH5|1|A5|U|2396
9BH5|1|A5|U|2397
9BH5|1|A5|A|2398
9BH5|1|A5|A|2399
9BH5|1|A5|U|2400
9BH5|1|A5|U|2401
9BH5|1|A5|G|2402

Current chains

Chain A5

28S rRNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CV

Large ribosomal subunit protein uL14