HL_9BH5_057
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAUUGUUUC
- Length
- 9 nucleotides
- Bulged bases
- 9BH5|1|A5|A|2889
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_057 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.1535
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
9BH5|1|A5|G|2888
9BH5|1|A5|A|2889
9BH5|1|A5|U|2890
9BH5|1|A5|U|2891
9BH5|1|A5|G|2892
9BH5|1|A5|U|2893
9BH5|1|A5|U|2894
9BH5|1|A5|U|2895
9BH5|1|A5|C|2896
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CL
- Large ribosomal subunit protein eL13
- Chain Ca
- Large ribosomal subunit protein uL15
- Chain Ci
- Large ribosomal subunit protein eL36
- Chain Co
- Large ribosomal subunit protein eL42
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