HL_9BH5_072

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

9BH5|1|A8|A|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_072 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.1133

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

9BH5|1|A8|C|106
9BH5|1|A8|A|107
9BH5|1|A8|U|108
9BH5|1|A8|A|109
9BH5|1|A8|G|110

Current chains

Chain A8

5.8S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain Cj

Ribosomal protein L37

Chain Cl

Large ribosomal subunit protein eL39