HL_9BH5_073

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGCCUC

Length

6 nucleotides

Bulged bases

9BH5|1|A8|U|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_073 not in the Motif Atlas

Geometric match to HL_5NDI_002

Geometric discrepancy: 0.2969

The information below is about HL_5NDI_002

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9BH5|1|A8|G|120
9BH5|1|A8|G|121
9BH5|1|A8|C|122
9BH5|1|A8|C|123
9BH5|1|A8|U|124
9BH5|1|A8|C|125

Current chains

Chain A8

5.8S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CX

Large ribosomal subunit protein uL23B