HL_9BH5_079

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUUAUUGGA

Length

9 nucleotides

Bulged bases

9BH5|1|B2|G|317

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_079 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.1234

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9BH5|1|B2|U|310
9BH5|1|B2|U|311
9BH5|1|B2|U|312
9BH5|1|B2|A|313
9BH5|1|B2|U|314
9BH5|1|B2|U|315
9BH5|1|B2|G|316
9BH5|1|B2|G|317
9BH5|1|B2|A|318

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AI

Small ribosomal subunit protein eS8

Chain AL

Small ribosomal subunit protein uS17