HL_9BH5_080

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_080 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1468

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9BH5|1|B2|U|348
9BH5|1|B2|A|349
9BH5|1|B2|A|350
9BH5|1|B2|G|351
9BH5|1|B2|G|352
9BH5|1|B2|G|353

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS5

Chain AJ

Small ribosomal subunit protein uS4

Chain AL

Small ribosomal subunit protein uS17

Chain AW

Ribosomal Protein, Small subunit