HL_9BH5_081
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CCUUAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9BH5|1|B2|G|383
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_081 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0752
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BH5|1|B2|C|373
9BH5|1|B2|C|374
9BH5|1|B2|U|375
9BH5|1|B2|U|376
9BH5|1|B2|A|377
9BH5|1|B2|G|378
9BH5|1|B2|A|379
9BH5|1|B2|A|380
9BH5|1|B2|A|381
9BH5|1|B2|C|382
9BH5|1|B2|G|383
9BH5|1|B2|G|384
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AE
- Small ribosomal subunit protein eS4
- Chain AG
- Small ribosomal subunit protein eS6
- Chain AI
- Small ribosomal subunit protein eS8
- Chain AY
- Small ribosomal subunit protein eS24
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