HL_9BH5_082

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9BH5|1|B2|A|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_082 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.0796

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

9BH5|1|B2|C|394
9BH5|1|B2|C|395
9BH5|1|B2|A|396
9BH5|1|B2|A|397
9BH5|1|B2|G|398
9BH5|1|B2|G|399

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AG

Small ribosomal subunit protein eS6

Chain CV

Large ribosomal subunit protein uL14

Chain CW

Large ribosomal subunit protein eL24